WCM Proteomics and Metabolomics Core Facility


  • Note: due to the pandemic, for sample drop-off, please schedule a time in advance with core staff to ensure that someone will be in the lab.
  • Dec 2020 New services available: folate metabolite profiling 
  • Jan 2020 New services available: Untargeted metabolite profiling.
  • Oct 2019 New services available for lipids, fatty acids, bile acids, acyl-carnitines and short chain acyl-CoAs.
  • More News ... 


Established in 2016, the Weill Cornell Medicine (WCM) Meyer Cancer Center Proteomics and Metabolomics Core Facility offers mass spectrometry-based analysis of proteins, peptides, metabolites and other biochemical molecules, to Weill Cornell Medicine users as well as external users from academic institutions and commercial enterprises.

  • Proteomics
    • Protein Identification
      • protein in gel / in solution
    • Protein Quantitation
      • Popular applications: protein expression profiling; protein interactions (IP); proximity-based labeling for interactome mapping (APEX); Thermo Proteome Profiling (TPP)/Cellular Thermal Shift Assay (CETSA); Targeted Protein Degradation (TPP), etc. 
      • Methods include: SILAC, TMT (See details HERE), Label-free, spiked standards, etc.
    • Post-Translational Modification (PTM)
      • Popular applications: protein phosphorylation profiling; PTM characterization of purified protein; histone modifications profiling(See details HERE); crosslinking proteomics, etc.
      • PTMs include: Phosphorylation, ubiquitination, acetylation, N/C-term processing, etc.
  • Metabolomics
    • Targeted profiling of polar metabolites (Targeted detection of metabolites in a predefined panel, which includes many central metabolites such as glycolysis/TCA intermediates and amino acids. See the list HERE. See a Sample report. )
    • Stable isotope tracing / flux for polar metabolites (e.g. C13 glucose labeling. See a Sample report. )
      • Type 1: Tracing of selected metabolites (Please select metabolites from the LIST to avoid ambiguity.)
      • Type 2: Full panel tracing (Exhaustive tracing of all detected metabolites. No need to know beforehand if a particular metabolite is labeled or not. Note: minimum 6 samples) 
    • Untargeted metabolite profiling (See details HERE.)
    • Lipid profiling (See the list HERE.)
    • Free fatty acid profiling  (See the list HERE.)
    • Bile acids  (See the list HERE.)
    • Acylcarnitine profiling  (See the list HERE.)
    • Short chain Acyl-CoAs  (See the list HERE.)
    • Folate metabolites  (See the list HERE.)
    • Thyroid hormones triiodothyronine/thyroxine (T3/T4) absolute quantitation (100 ul serum is needed)
    • Targeted analysis of 7 polyamines (See the list HERE.)
    • Accurate MW measurement (HRMS) for drugs/chemicals (mass accuracy: a few ppm)
    • New method development


    • Unless otherwise noted, quantitation in all assays is relative quantitation, not absolute.
    • Turnaround time is normally 5-10 business days, except for global protein/PTM profiling (~4 weeks).

Sample Preparation Protocols


  • Click HERE to see pricing
  • Note: service rates are adjusted annually to reflect changes in running cost

Service Request

Note: All service requests are done via the online iLab system. An iLab account is needed for sample submissions.


             Orbitrap Fusion Lumos

    Orbitrap Q Exactive / Vanquish UPLC

  • Easy-nLC 1200 UPLC 
  • Agilent 1260 

timsTOF Pro 2

Bruker timsTOF Pro 2

  • High sensitivity mass spectrometer for label-free proteomics


Links and Resources

  • To acknowledge the core in a publication
    • Mass spectrometric analysis was (analyses were) performed at the Weill Cornell Medicine Proteomics and Metabolomics Core Facility.
  • Report format

Contact Us

Guoan Zhang PhD
Phone (646) 962-6222

Dr. Mengmeng Zhu - mez2005@med.cornell.edu
Dr. Xiaoyuan Yang - xiy4003@med.cornell.edu
Phone (646) 962-9739

Sample Drop-off / Shipping Address

413 East 69th Street, BRB 1552 (Zhang lab)
New York, NY 10021
Lab phone: 646-962-9739

(For sample drop off, please drop off to Lab 1552 of Belfer building. Call 646-962-9739 to get into the glass door when arriving at 15th floor.)

Note: due to the pandemic, for all sample drop-off, please schedule a time in advance with core staff to ensure that some one will be in the lab.

<div id="global_footer"> <div id="footer_container"> <div class="clearfix"> <div class="logos"> <ul class="clearfix"> <li><a href="http://weill.cornell.edu/"><img width="171" height="37" alt="Weill Cornell Medical College" src="/content/institution/cornell/images/footer_logo_wcmc.gif"></a></li> <li><a href="http://nyp.org/"><img width="174" height="37" alt="New York Presbyterian" src="/content/institution/cornell/images/footer_logo_nyp.gif"></a></li> </ul> </div> <div class="social_and_site_links"> <ul class="clearfix"> <li><a href="http://www.facebook.com/pages/New-York-NY/Weill-Cornell-Medical-College/384417530480" class="social_sprite ir" id="icon_facebook" target="_blank"> <img src="/content/institution/cornell/images/footer_icon_facebook.png" width="16" height="16" alt="WCMC Facebook Profile" target="_blank"> </a></li> <li><a href="http://twitter.com/weillcornell" class="social_sprite ir" id="icon_twitter"> <img src="/content/institution/cornell/images/footer_icon_twitter.png" width="16" height="16" alt="WCMC Twitter Page" target="_blank"> </a></li> <li><a href="http://www.youtube.com/wcmcnews" class="social_sprite ir" id="icon_youtube"> <img src="/content/institution/cornell/images/footer_icon_youtube.png" width="16" height="16" alt="WCMC YouTube Channel" target="_blank"> </a></li> </ul> </div> </div> <div class="info"> Located In New York City, <a href="http://weill.cornell.edu/">Weill Cornell Medical College</a> and <a href="http://weill.cornell.edu/gradschool/">Weill Cornell Graduate School of Medical Sciences</a> are part of <a href="http://www.cornell.edu">Cornell University</a>. </div> <div class="legal_and_contact_info clearfix"> <ul class="legal"> <li class="clearfix"> <ul> <li><a href="http://weill.cornell.edu/legal/index.html">Privacy</a></li> <li>|</li> <li><a href="http://weill.cornell.edu/legal/disclaimer.html">Disclaimer</a></li> </ul> </li> <li>&copy; Weill Cornell Medical College. All rights reserved.</li> </ul> <div class="contact clearfix"> <a href="http://weill.cornell.edu/visitors/index.html">VIEW MAP</a> <a href="http://weill.cornell.edu/visitors/contact-us.html">CONTACT</a> </div> <div class="address"> <p>Weill Cornell Medical College &bull; 1300 York Avenue &bull; New York, NY 10065</p> <p>Phone: (212) 746-5454</p> </div> </div> </div> <!-- /end #footer_container --> </div>